applyPatches.sh: line 2: $'\r': command not found
Rebuilding Forked projects.... 
applyPatches.sh: line 6: $'\r': command not found
applyPatches.sh: line 7: syntax error near unexpected token `$'{\r''
applyPatches.sh: line 7: `function applyPatch {
'
Error compiling Spigot, are you running this jar via msysgit?
java.lang.RuntimeException: Error running command, return status !=0: [bash, applyPatches.sh]
    at org.spigotmc.builder.Builder.runProcess(Builder.java:498)
    at org.spigotmc.builder.Builder.main(Builder.java:395)